##FastQC	0.10.0
>>Basic Statistics	pass
#Measure	Value	
Filename	lane3_Index6_1.fq	
File type	Conventional base calls	
Encoding	Illumina 1.5	
Total Sequences	22902433	
Filtered Sequences	0	
Sequence length	90	
%GC	50	
>>END_MODULE
>>Per base sequence quality	pass
#Base	Mean	Median	Lower Quartile	Upper Quartile	10th Percentile	90th Percentile
1	32.124528996548094	33.0	31.0	34.0	30.0	34.0
2	32.399686618447916	34.0	31.0	34.0	31.0	34.0
3	32.429716790351485	34.0	31.0	34.0	31.0	34.0
4	36.07146035532557	37.0	35.0	37.0	35.0	37.0
5	35.95960983708587	37.0	35.0	37.0	35.0	37.0
6	35.949025808742675	37.0	35.0	37.0	35.0	37.0
7	35.923451102334845	37.0	35.0	37.0	35.0	37.0
8	35.874586730588845	37.0	35.0	37.0	35.0	37.0
9	37.606331737767775	39.0	37.0	39.0	35.0	39.0
10-14	37.841883235724346	39.2	37.2	39.4	35.0	39.4
15-19	38.800298911473725	40.0	38.0	41.0	35.0	41.0
20-24	38.63495759598992	40.0	38.0	41.0	34.0	41.0
25-29	38.29753263332328	40.0	38.0	41.0	33.8	41.0
30-34	38.243820130376534	40.0	38.0	41.0	33.6	41.0
35-39	37.942282629972105	40.0	37.2	41.0	33.0	41.0
40-44	37.85413175098034	40.0	37.0	41.0	33.0	41.0
45-49	37.51619611767885	39.4	36.2	41.0	32.2	41.0
50-54	36.941805064990255	39.0	35.0	40.8	31.0	41.0
55-59	36.24328634429364	37.8	34.8	40.0	30.2	41.0
60-64	35.465232632707625	36.6	34.0	39.8	29.2	41.0
65-69	34.538447919485236	35.4	33.4	38.8	28.4	40.6
70-74	33.539668549625276	35.0	32.8	37.2	26.6	39.6
75-79	32.54057384208918	34.8	31.8	36.0	26.0	38.6
80-84	31.925001845873755	34.6	32.0	35.0	25.2	36.8
85-89	30.837948666851247	34.0	31.0	35.0	22.0	36.0
90	29.88875548724452	34.0	31.0	35.0	2.0	35.0
>>END_MODULE
>>Per sequence quality scores	pass
#Quality	Count
10	1.0
11	21.0
12	117.0
13	988.0
14	4492.0
15	11932.0
16	21149.0
17	29876.0
18	38219.0
19	46362.0
20	56254.0
21	66696.0
22	77933.0
23	92290.0
24	111955.0
25	141006.0
26	181081.0
27	234342.0
28	302115.0
29	384672.0
30	486405.0
31	612399.0
32	771016.0
33	996770.0
34	1349567.0
35	1954862.0
36	3049042.0
37	4479520.0
38	4917171.0
39	2448501.0
40	35679.0
>>END_MODULE
>>Per base sequence content	fail
#Base	G	A	T	C
1	24.258250169764146	12.645376139397937	10.934237598376987	52.16213609246093
2	22.30209340640796	19.133098217119553	33.88249623959167	24.682312136880828
3	25.786443737222154	21.148285861157195	22.386521117647195	30.678749283973456
4	28.070751260357362	26.21438517034413	19.451448673597255	26.263414895701253
5	29.807338129219975	28.745720318268773	21.62970315255988	19.817238399951375
6	25.118471037553086	32.09108394728194	21.347902207595148	21.442542807569833
7	22.191978467964518	18.936394225015306	36.61064307010526	22.260984236914915
8	22.229743014639535	22.25455260583013	28.51697896027029	26.99872541926004
9	21.887486801074804	20.949381229496446	31.253090010131242	25.910041959297516
10-14	25.042225863077515	25.804415626933608	24.252115048213437	24.901243461775437
15-19	25.341916293347523	24.767966791999786	24.7104523785748	25.17966453607789
20-24	25.139355501132616	24.984364979776295	25.015578257694965	24.860701261396127
25-29	25.053691504972715	24.980229375485095	24.937979678175914	25.028099441366276
30-34	25.078292166748728	24.91856573696829	24.90389796343606	25.09924413284692
35-39	25.120700149815693	25.060036446952495	24.839024911845108	24.9802384913867
40-44	25.068426327732407	24.874974861177986	25.01023019493124	25.04636861615837
45-49	24.986043942935	24.960629439918566	24.938721198657717	25.11460541848872
50-54	25.044021998238613	25.028150409488216	24.963115500290346	24.964712091982825
55-59	25.070379069580838	24.956780491952404	24.91005643983944	25.062783998627314
60-64	24.98190954718577	24.990830005073963	25.01130732441026	25.01595312333001
65-69	25.01278403951756	25.107533121855507	24.986386789211924	24.89329604941501
70-74	25.075944192711887	25.027280245301785	24.90429906903783	24.992476492948494
75-79	25.056948059761098	25.000469389327368	24.970685217421924	24.971897333489615
80-84	24.982608353785217	25.13898427686198	24.96740556354881	24.911001805804
85-89	25.088641523756657	25.098612573567163	24.88589684427626	24.92684905839992
90	24.80294194649047	25.27284927667805	25.06772219560685	24.85648658122463
>>END_MODULE
>>Per base GC content	fail
#Base	%GC
1	76.42038626222507
2	46.98440554328879
3	56.4651930211956
4	54.334166156058615
5	49.62457652917135
6	46.561013845122915
7	44.45296270487943
8	49.22846843389957
9	47.797528760372316
10-14	49.94346932485295
15-19	50.52158082942542
20-24	50.00005676252874
25-29	50.08179094633899
30-34	50.17753629959565
35-39	50.1009386412024
40-44	50.114794943890786
45-49	50.10064936142371
50-54	50.00873409022144
55-59	50.133163068208155
60-64	49.99786267051577
65-69	49.90608008893257
70-74	50.068420685660385
75-79	50.02884539325071
80-84	49.893610159589215
85-89	50.01549058215657
90	49.6594285277151
>>END_MODULE
>>Per sequence GC content	pass
#GC Content	Count
0	5.0
1	2.5
2	1.0
3	2.0
4	3.5
5	4.5
6	6.5
7	10.5
8	21.0
9	39.0
10	48.0
11	65.5
12	96.0
13	141.0
14	241.5
15	421.0
16	766.5
17	1353.5
18	2367.0
19	4188.5
20	5349.0
21	7243.5
22	12207.0
23	19686.5
24	30393.5
25	45813.0
26	67442.0
27	96177.0
28	129707.0
29	168429.0
30	189850.0
31	212564.5
32	259406.5
33	311479.0
34	368798.0
35	424234.0
36	480873.5
37	541972.0
38	594938.5
39	639884.5
40	662385.0
41	678396.5
42	711001.0
43	740845.5
44	760657.0
45	772668.5
46	776261.5
47	774351.0
48	778795.0
49	784847.5
50	786404.0
51	781752.0
52	779496.0
53	774085.0
54	772400.5
55	776681.5
56	769128.5
57	757588.5
58	738307.5
59	710779.0
60	696703.0
61	679507.5
62	642033.0
63	594421.0
64	538394.0
65	480513.5
66	418600.0
67	354311.5
68	295902.0
69	240365.0
70	211676.0
71	187186.5
72	141695.0
73	103270.0
74	71011.0
75	44884.0
76	26282.5
77	14109.5
78	6516.0
79	2611.0
80	1437.0
81	1017.5
82	420.5
83	168.5
84	76.0
85	43.5
86	25.0
87	19.0
88	10.5
89	4.0
90	4.0
91	3.5
92	2.5
93	1.0
94	1.5
95	1.5
96	0.5
97	0.5
98	0.0
99	0.0
100	0.0
>>END_MODULE
>>Per base N content	pass
#Base	N-Count
1	0.23178760090685563
2	0.0
3	0.0
4	0.0
5	1.266241014655517E-4
6	0.0
7	0.0
8	0.0
9	0.0
10-14	0.0
15-19	0.0
20-24	8.732696652796671E-7
25-29	8.907350585852604E-5
30-34	0.002292332871359126
35-39	0.004778531608410338
40-44	0.006980044434580378
45-49	0.002397125231192686
50-54	0.015955510054324797
55-59	0.0032214917952166915
60-64	9.25665845196447E-5
65-69	2.0783818033656075E-4
70-74	0.0038397667182346958
75-79	0.001466219768004561
80-84	2.541214725963831E-4
85-89	5.693718217623429E-4
90	1.9648567468792506E-4
>>END_MODULE
>>Sequence Length Distribution	pass
#Length	Count
90	2.2902433E7
>>END_MODULE
>>Sequence Duplication Levels	fail
#Total Duplicate Percentage	53.16681750206895
#Duplication Level	Relative count
1	100.0
2	30.850470187041438
3	15.991526299472977
4	9.932830422651648
5	6.690089903895836
6	5.055285729048259
7	3.743928903585822
8	3.073266508215356
9	2.583445282628914
10++	28.754779373772863
>>END_MODULE
>>Overrepresented sequences	pass
>>END_MODULE
>>Kmer Content	warn
#Sequence	Count	Obs/Exp Overall	Obs/Exp Max	Max Obs/Exp Position
CCAGG	5059715	2.5904734	5.408681	1
CCTGG	5073675	2.5848556	6.1452966	1
CTTCT	4989750	2.5650177	5.430183	1
CTGGA	4769635	2.477924	8.387785	1
TCCAG	4656085	2.3945444	5.584927	2
CTCCT	4606675	2.3337228	6.988803	1
CTGGG	4398430	2.2636654	8.031948	1
CAGGA	4327215	2.2591794	5.3246446	1
CTTCA	4273305	2.2075717	5.3904305	1
CTCCA	4319680	2.1991389	7.342767	1
CCCAG	4276475	2.1673949	6.9475274	1
CTCTG	4016680	2.0555584	6.245497	1
CTGAA	3549575	1.8615193	5.365544	1
CTCAG	3410210	1.7538123	5.572196	1
>>END_MODULE
